Introduction To Bash:
Using the Terminal For Bioinformatics

Presented by BIG-SA

Introductory Slides

Wi-Fi

• Use your University of Adelaide login
• External attendees can use the UofA gues WiFi
  • Today’s password is stationwork

Course Material

• 0 Introduction
• 1 Bash Basics
• 2 Filters
• 3 Sed, Awk and Grep
• 4 Writing Bash Scripts
• Optional: More Advanced Scripting Techniques

Course Schedule

The workshop will be run in a series of 2 hour sessions

North Terrace Campus

All sessions will be held in The Braggs, Room 450

Date	Time	Main Topics
Wed, Sept 19th	10:30am-12:30pm	Introduction to bash
Wed, Sept 19th	1:30pm-3:30pm	Working with files in bash
Wed, Sept 26th	10:30am-12:30pm	The tools grep, sed and awk
Wed, Sept 26th	1:30pm-3:30pm	Bash Scripting

Extra Material

Cheatsheet

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